PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.169240.1
Common NameCsa_2G263910, LOC101213608
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 336aa    MW: 37174.4 Da    PI: 5.5364
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.169240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-0953102154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     rr+ +  rE+ RR r+N+ f eL  +l ++     +K++Ka+iL  +++ +k+L
  Cucsa.169240.1  53 RRVQKADREKLRRGRLNEQFVELGNILDPD----RPKNDKATILMDTIQLLKDL 102
                     799999*********************997....79**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-1451122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.62752102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-1252124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-553106No hitNo description
PfamPF000101.1E-653102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-558108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDQLIQRDGL LQNPPTPSSS SSVVPCVELP GHPIRSQSSS RSEGEFKDSA AARRVQKADR  60
EKLRRGRLNE QFVELGNILD PDRPKNDKAT ILMDTIQLLK DLTSQVNKLK AEYATLTEES  120
QELAQEKSDL REEKALLKSD IENLNTQYQQ KLRATYPWAA MDHSVVMAPA PFPFPMPMQM  180
PPGPYPLHPS LQPFTFFGNP DPRVIANPCS TFVPYIPPNS LTEQQSSQNA PPFIQSDNRS  240
RNLSEQNTRS KSSIESKIEK SEDSNEVATC LELKTPGSST DQDTSYEQTN GKNRKESNLS  300
VESSSSRCSS PRSLEANSSS SMPNGRKSTD ICGSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147018.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT237e-93BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0A0LPK40.0A0A0A0LPK4_CUCSA; Uncharacterized protein
STRINGSolyc01g111130.2.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-82bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]